PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_005227-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NF-YB
Protein Properties Length: 198aa    MW: 21919.6 Da    PI: 5.321
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_005227-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1771.8e-5534130197
          NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                    vreqdrf+Pianv+rim+kvlP++akis+daket+qecvse+isf+tsea+d+cqre+rkti+++d+lwa+++lGf+dy+epl+vyl++yrelege
  NNU_005227-RA  34 VREQDRFMPIANVIRIMRKVLPTHAKISDDAKETIQECVSEYISFITSEANDRCQREQRKTITAEDVLWAMSKLGFDDYIEPLTVYLQRYRELEGE 129
                    69*********************************************************************************************9 PP

          NF-YB  97 k 97 
                    +
  NNU_005227-RA 130 R 130
                    7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.4E-5230134IPR009072Histone-fold
SuperFamilySSF471134.35E-3937133IPR009072Histone-fold
PfamPF008088.7E-2640104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.3E-186886No hitNo description
PROSITE patternPS0068507187IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.3E-1887105No hitNo description
PRINTSPR006154.3E-18106124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MTGMMLSNIS NTSNGQGQST GGDETSERDT ACTVREQDRF MPIANVIRIM RKVLPTHAKI  60
SDDAKETIQE CVSEYISFIT SEANDRCQRE QRKTITAEDV LWAMSKLGFD DYIEPLTVYL  120
QRYRELEGER GSIRGEPLVK RTMDLGALGV AAFAPAFHMS HHQGLFGAPI GGFFRDVGSS  180
ASSSQAAMAS FDPYAQYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B4e-4133125294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A4e-4133125294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252777.11e-147PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotQ84W661e-67NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBLD7SZ498e-99D7SZ49_VITVI; Putative uncharacterized protein
STRINGVIT_00s0956g00020.t012e-98(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.23e-68nuclear factor Y, subunit B6